Function reference • hakedataUSA

All functions
`calc_ageerror()`	Calculate ageing error matrix
`calc_calendar_date()`	Find the date for a weekday
`coalesce_join()`	Mutating join
`f_date()`	Format dates
`f_vessel_type()`	Format `VESSEL_TYPE` as a character
`format_big_number()`	Format an object with a comma
`get_confidential()`	Get number of unique values per grouping
`get_depth_by_year()`	Get depth data by year and calculate boxplot stats on it.
`get_local()`	Load an object from an `.Rdat` file
`hakedata_sql_password()`	Find username and passwords for databases
`hakedata_wd()`	Find the working directory for `hake-assessment`
`hakedata_year()`	Find last year of data for current assessment
`load_age_fishery()`	Load data and create age compositions
`make_wtatage_plots()`	Write Weight-At-Age Plots to Disk
`maturity_at_age`	Proportion mature at each age
`plot_colour()`	Colours for the Hake Assessment
`plot_raw_age()`	Workup At-Sea and PacFIN lengths and weights
`plot_theme()`	Theme For `theme`
`plot_weight_at_age()`	Plot weight-at-age data
`process_age_sea()`	Process age data from the Pacific Hake U.S. at-sea fishery
`process_age_shore()`	Workup shoreside composition data
`process_catch_norpac()`	Process NORPAC catches
`process_catch_pacfin()`	Print summaries and figures for catches from PacFIN
`process_database()`	Process the raw data from `pull_database()`
`process_weight_at_age()`	Create weight-at-age files for hake assessment
`process_weight_at_age_survey()`	Get the weight-at-age data from the NWFSC server
`pull_database()`	Pull data from databases for Pacific Hake
`pull_surveyageproportions()`	Calculate age proportions for the acoustic age-2+ survey
`queryDB()`	Wrapper to make a query from a sql file and get the data from a database using RODBC
`quotas`	Quota information for U.S. sectors of Pacific Hake fishery
`update_ss3_catch()`	Update the catches in a Stock Synthesis file
`weight_at_age_outlier()` `plot_weight_at_age_outlier()`	Identify weight-at-age outliers
`weight_at_age_read()`	Read weight-at-age files from the disk and filter appropriately
`weight_at_age_wide()`	Turn a long data frame of weight-at-age data into a wide data frame by age
`write_bridging()`	Write a set of Stock Synthesis input files to a directory for bridging
`write_wtatage_file()`	Write weight-at-age file

Reference

All functions